IL_5NGM_140

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_140 not in the Motif Atlas

Geometric match to IL_4LFB_033

Geometric discrepancy: 0.0826

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

5NGM|1|Aa|C|787
5NGM|1|Aa|A|788
5NGM|1|Aa|A|789
5NGM|1|Aa|A|790
5NGM|1|Aa|C|791
*
5NGM|1|Aa|G|807
5NGM|1|Aa|G|808
5NGM|1|Aa|U|809
5NGM|1|Aa|A|810
5NGM|1|Aa|G|811

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain Ak

30S ribosomal protein S11

Chain Au

30S ribosomal protein S21