IL_5NGM_142

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

5NGM|1|Aa|A|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_142 not in the Motif Atlas

Homologous match to IL_4LFB_035

Geometric discrepancy: 0.1128

The information below is about IL_4LFB_035

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

5NGM|1|Aa|G|931
5NGM|1|Aa|A|932
*
5NGM|1|Aa|U|1403
5NGM|1|Aa|A|1404
5NGM|1|Aa|C|1405

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ae

30S ribosomal protein S5