IL_5NGM_149
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGCAU*AUGC
- Length
- 10 nucleotides
- Bulged bases
- 5NGM|1|Aa|C|1065
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NGM_149 not in the Motif Atlas
- Geometric match to IL_4V88_473
- Geometric discrepancy: 0.3916
- The information below is about IL_4V88_473
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_36174.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
5NGM|1|Aa|G|1062
5NGM|1|Aa|U|1063
5NGM|1|Aa|G|1064
5NGM|1|Aa|C|1065
5NGM|1|Aa|A|1066
5NGM|1|Aa|U|1067
*
5NGM|1|Aa|A|1214
5NGM|1|Aa|U|1215
5NGM|1|Aa|G|1216
5NGM|1|Aa|C|1217
Current chains
- Chain Aa
- 16S ribosomal RNA
Nearby chains
- Chain Ac
- 30S ribosomal protein S3
- Chain Aj
- 30S ribosomal protein S10
- Chain An
- 30S ribosomal protein S14 type Z
- Chain Av
- Ribosome hibernation promoting factor
Coloring options: