IL_5NGM_150

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

5NGM|1|Aa|C|1210, 5NGM|1|Aa|A|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_150 not in the Motif Atlas

Homologous match to IL_5J7L_048

Geometric discrepancy: 0.1526

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

5NGM|1|Aa|G|1068
5NGM|1|Aa|G|1069
*
5NGM|1|Aa|U|1209
5NGM|1|Aa|C|1210
5NGM|1|Aa|A|1211
5NGM|1|Aa|U|1212
5NGM|1|Aa|C|1213

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ac

30S ribosomal protein S3

Chain Aj

30S ribosomal protein S10

Chain An

30S ribosomal protein S14 type Z

Chain Av

Ribosome hibernation promoting factor