IL_5NGM_153
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UACAAAG*CAUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 5NGM|1|Aa|U|1296
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NGM_153 not in the Motif Atlas
- Homologous match to IL_5J7L_054
- Geometric discrepancy: 0.1877
- The information below is about IL_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09129.2
- Basepair signature
- cWW-L-R-tWH-L-R-L-tWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5NGM|1|Aa|U|1257
5NGM|1|Aa|A|1258
5NGM|1|Aa|C|1259
5NGM|1|Aa|A|1260
5NGM|1|Aa|A|1261
5NGM|1|Aa|A|1262
5NGM|1|Aa|G|1263
*
5NGM|1|Aa|C|1294
5NGM|1|Aa|A|1295
5NGM|1|Aa|U|1296
5NGM|1|Aa|A|1297
5NGM|1|Aa|A|1298
5NGM|1|Aa|A|1299
5NGM|1|Aa|G|1300
Current chains
- Chain Aa
- 16S ribosomal RNA
Nearby chains
- Chain Ag
- 30S ribosomal protein S7
- Chain Ai
- 30S ribosomal protein S9
- Chain Aj
- 30S ribosomal protein S10
- Chain An
- 30S ribosomal protein S14 type Z
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