IL_5NGM_155

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAAC*GUCAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_155 not in the Motif Atlas

Geometric match to IL_1L9A_008

Geometric discrepancy: 0.3341

The information below is about IL_1L9A_008

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_71294.3

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

5NGM|1|Aa|C|1269
5NGM|1|Aa|G|1270
5NGM|1|Aa|A|1271
5NGM|1|Aa|A|1272
5NGM|1|Aa|A|1273
5NGM|1|Aa|C|1274
*
5NGM|1|Aa|G|1281
5NGM|1|Aa|U|1282
5NGM|1|Aa|C|1283
5NGM|1|Aa|A|1284
5NGM|1|Aa|A|1285
5NGM|1|Aa|G|1286

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain As

30S ribosomal protein S19