IL_5NGM_156

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_156 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1931

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5NGM|1|Aa|C|1313
5NGM|1|Aa|G|1314
5NGM|1|Aa|G|1315
5NGM|1|Aa|A|1316
5NGM|1|Aa|U|1317
5NGM|1|Aa|U|1318
*
5NGM|1|Aa|A|1339
5NGM|1|Aa|U|1340
5NGM|1|Aa|G|1341
5NGM|1|Aa|A|1342
5NGM|1|Aa|A|1343
5NGM|1|Aa|G|1344

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Am

30S ribosomal protein S13