IL_5NGM_157

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

5NGM|1|Aa|C|1410, 5NGM|1|Aa|A|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_157 not in the Motif Atlas

Homologous match to IL_4LFB_056

Geometric discrepancy: 0.1225

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

5NGM|1|Aa|C|1409
5NGM|1|Aa|C|1410
5NGM|1|Aa|G|1411
*
5NGM|1|Aa|C|1512
5NGM|1|Aa|A|1513
5NGM|1|Aa|A|1514
5NGM|1|Aa|G|1515

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Av

Ribosome hibernation promoting factor