IL_5NGM_168

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAG*UUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_168 not in the Motif Atlas

Geometric match to IL_4KQ0_005

Geometric discrepancy: 0.1822

The information below is about IL_4KQ0_005

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

5NGM|1|AA|G|426
5NGM|1|AA|A|427
5NGM|1|AA|G|428
*
5NGM|1|AA|U|438
5NGM|1|AA|U|439
5NGM|1|AA|C|440

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AV

50S ribosomal protein L28