IL_5NGM_181
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAAU*GGAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NGM_181 not in the Motif Atlas
- Homologous match to IL_4LFB_065
- Geometric discrepancy: 0.0918
- The information below is about IL_4LFB_065
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.1
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
5NGM|1|Aa|G|681
5NGM|1|Aa|G|682
5NGM|1|Aa|A|683
5NGM|1|Aa|A|684
5NGM|1|Aa|U|685
*
5NGM|1|Aa|G|721
5NGM|1|Aa|G|722
5NGM|1|Aa|A|723
5NGM|1|Aa|A|724
5NGM|1|Aa|C|725
Current chains
- Chain Aa
- 16S ribosomal RNA
Nearby chains
- Chain AC
- 50S ribosomal protein L2
- Chain Af
- 30S ribosomal protein S6
- Chain Ak
- 30S ribosomal protein S11
- Chain Ar
- 30S ribosomal protein S18
- Chain Au
- 30S ribosomal protein S21
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