IL_5NGM_183

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGAG*CUUUGAUC

Length

13 nucleotides

Bulged bases

5NGM|1|AA|U|100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NGM_183 not in the Motif Atlas

Homologous match to IL_9DFE_004

Geometric discrepancy: 0.1398

The information below is about IL_9DFE_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

5NGM|1|AA|G|81
5NGM|1|AA|G|82
5NGM|1|AA|G|83
5NGM|1|AA|A|84
5NGM|1|AA|G|85
*
5NGM|1|AA|C|97
5NGM|1|AA|U|98
5NGM|1|AA|U|99
5NGM|1|AA|U|100
5NGM|1|AA|G|101
5NGM|1|AA|A|102
5NGM|1|AA|U|103
5NGM|1|AA|C|104

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AS

50S ribosomal protein L24

Chain AW

50S ribosomal protein L29