IL_5NJT_010

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5NJT|1|A|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_010 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1534

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

5NJT|1|A|G|146
5NJT|1|A|G|147
5NJT|1|A|A|148
5NJT|1|A|U|149
5NJT|1|A|A|150
5NJT|1|A|A|151
5NJT|1|A|C|152
*
5NJT|1|A|G|167
5NJT|1|A|C|168
5NJT|1|A|U|169
5NJT|1|A|A|170
5NJT|1|A|A|171
5NJT|1|A|U|172
5NJT|1|A|A|173
5NJT|1|A|C|174

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20