IL_5NJT_030

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAGAG*UGGU

Length

9 nucleotides

Bulged bases

5NJT|1|A|A|674

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_030 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.1928

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5NJT|1|A|A|671
5NJT|1|A|A|672
5NJT|1|A|G|673
5NJT|1|A|A|674
5NJT|1|A|G|675
*
5NJT|1|A|U|749
5NJT|1|A|G|750
5NJT|1|A|G|751
5NJT|1|A|U|752

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain O

30S ribosomal protein S15

Chain R

30S ribosomal protein S18