IL_5NJT_033

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_033 not in the Motif Atlas

Homologous match to IL_5J7L_036

Geometric discrepancy: 0.1618

The information below is about IL_5J7L_036

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

5NJT|1|A|G|783
5NJT|1|A|G|784
5NJT|1|A|G|785
5NJT|1|A|A|786
5NJT|1|A|G|787
*
5NJT|1|A|U|813
5NJT|1|A|C|814

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain K

30S ribosomal protein S11

Chain U

Large subunit ribosomal RNA; LSU rRNA

Chain W

50S ribosomal protein L2