IL_5NJT_051
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AACAAAG*CACAAAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NJT_051 not in the Motif Atlas
- Homologous match to IL_4LFB_051
- Geometric discrepancy: 0.2084
- The information below is about IL_4LFB_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_12056.1
- Basepair signature
- cWW-L-R-R-bif-cWW
- Number of instances in this motif group
- 2
Unit IDs
5NJT|1|A|A|1256
5NJT|1|A|A|1257
5NJT|1|A|C|1258
5NJT|1|A|A|1259
5NJT|1|A|A|1260
5NJT|1|A|A|1261
5NJT|1|A|G|1262
*
5NJT|1|A|C|1293
5NJT|1|A|A|1294
5NJT|1|A|C|1295
5NJT|1|A|A|1296
5NJT|1|A|A|1297
5NJT|1|A|A|1298
5NJT|1|A|U|1299
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain G
- 30S ribosomal protein S7
- Chain I
- 30S ribosomal protein S9
- Chain J
- 30S ribosomal protein S10
Coloring options: