IL_5NJT_055

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

5NJT|1|A|C|1409, 5NJT|1|A|A|1513

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_055 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.2719

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

5NJT|1|A|C|1408
5NJT|1|A|C|1409
5NJT|1|A|G|1410
*
5NJT|1|A|C|1511
5NJT|1|A|A|1512
5NJT|1|A|A|1513
5NJT|1|A|G|1514

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain x

Ribosome hibernation promotion factor