IL_5NJT_058

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

5NJT|1|A|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_058 not in the Motif Atlas

Geometric match to IL_1M5K_004

Geometric discrepancy: 0.3446

The information below is about IL_1M5K_004

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

5NJT|1|A|C|1416
5NJT|1|A|A|1417
5NJT|1|A|C|1418
*
5NJT|1|A|G|1501
5NJT|1|A|A|1502
5NJT|1|A|A|1503
5NJT|1|A|G|1504

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain U

Large subunit ribosomal RNA; LSU rRNA

Chain x

Ribosome hibernation promotion factor