IL_5NJT_064

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAG*CAG

Length

7 nucleotides

Bulged bases

5NJT|1|A|A|1451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_064 not in the Motif Atlas

Geometric match to IL_7A0S_077

Geometric discrepancy: 0.1619

The information below is about IL_7A0S_077

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5NJT|1|A|U|1449
5NJT|1|A|G|1450
5NJT|1|A|A|1451
5NJT|1|A|G|1452
*
5NJT|1|A|C|1469
5NJT|1|A|A|1470
5NJT|1|A|G|1471

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20

Chain U

Large subunit ribosomal RNA; LSU rRNA

Chain i

50S ribosomal protein L19