IL_5NJT_071

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_071 not in the Motif Atlas

Geometric match to IL_7A0S_006

Geometric discrepancy: 0.1358

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.1

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

5NJT|1|U|G|191
5NJT|1|U|G|192
5NJT|1|U|A|193
5NJT|1|U|A|194
5NJT|1|U|C|195
5NJT|1|U|U|196
5NJT|1|U|G|197
*
5NJT|1|U|C|204
5NJT|1|U|U|205
5NJT|1|U|A|206
5NJT|1|U|A|207
5NJT|1|U|G|208
5NJT|1|U|U|209
5NJT|1|U|A|210
5NJT|1|U|C|211

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L15

Chain u

50S ribosomal protein L28