IL_5NJT_084

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5NJT|1|U|G|848, 5NJT|1|U|G|852

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_084 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.1608

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5NJT|1|U|G|721
5NJT|1|U|A|722
5NJT|1|U|A|723
5NJT|1|U|A|724
5NJT|1|U|C|725
*
5NJT|1|U|G|846
5NJT|1|U|A|847
5NJT|1|U|G|848
5NJT|1|U|A|849
5NJT|1|U|U|850
5NJT|1|U|A|851
5NJT|1|U|G|852
5NJT|1|U|C|853

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain Y

50S ribosomal protein L4

Chain e

50S ribosomal protein L15