IL_5NJT_104
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGAAAAG*CGAAAAUGUACCGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 5NJT|1|U|A|1173, 5NJT|1|U|U|1176
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NJT_104 not in the Motif Atlas
- Geometric match to IL_4WF9_040
- Geometric discrepancy: 0.1986
- The information below is about IL_4WF9_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
5NJT|1|U|G|1070
5NJT|1|U|G|1071
5NJT|1|U|A|1072
5NJT|1|U|A|1073
5NJT|1|U|A|1074
5NJT|1|U|A|1075
5NJT|1|U|G|1076
*
5NJT|1|U|C|1170
5NJT|1|U|G|1171
5NJT|1|U|A|1172
5NJT|1|U|A|1173
5NJT|1|U|A|1174
5NJT|1|U|A|1175
5NJT|1|U|U|1176
5NJT|1|U|G|1177
5NJT|1|U|U|1178
5NJT|1|U|A|1179
5NJT|1|U|C|1180
5NJT|1|U|C|1181
5NJT|1|U|G|1182
5NJT|1|U|G|1183
5NJT|1|U|G|1184
5NJT|1|U|G|1185
5NJT|1|U|C|1186
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain V
- 5S ribosomal RNA; 5S rRNA
- Chain X
- 50S ribosomal protein L3
- Chain c
- 50S ribosomal protein L13
- Chain f
- 50S ribosomal protein L16
- Chain t
- 50S ribosomal protein L36
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