IL_5NJT_106
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUUAGACAA*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 5NJT|1|U|A|1092
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NJT_106 not in the Motif Atlas
- Homologous match to IL_5J7L_284
- Geometric discrepancy: 0.191
- The information below is about IL_5J7L_284
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
5NJT|1|U|C|1089
5NJT|1|U|U|1090
5NJT|1|U|U|1091
5NJT|1|U|A|1092
5NJT|1|U|G|1093
5NJT|1|U|A|1094
5NJT|1|U|C|1095
5NJT|1|U|A|1096
5NJT|1|U|A|1097
*
5NJT|1|U|U|1154
5NJT|1|U|C|1155
5NJT|1|U|G|1156
5NJT|1|U|A|1157
5NJT|1|U|G|1158
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain a
- 50S ribosomal protein L6
- Chain b
- 50S ribosomal protein L10
- Chain t
- 50S ribosomal protein L36
Coloring options: