IL_5NJT_110

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAGGG*CGCUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_110 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3155

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

5NJT|1|U|A|1243
5NJT|1|U|A|1244
5NJT|1|U|G|1245
5NJT|1|U|G|1246
5NJT|1|U|G|1247
*
5NJT|1|U|C|1279
5NJT|1|U|G|1280
5NJT|1|U|C|1281
5NJT|1|U|U|1282
5NJT|1|U|U|1283

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain Y

50S ribosomal protein L4

Chain e

50S ribosomal protein L15