IL_5NJT_115

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

5NJT|1|U|G|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_115 not in the Motif Atlas

Homologous match to IL_7A0S_047

Geometric discrepancy: 0.2355

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

5NJT|1|U|G|1358
5NJT|1|U|G|1359
5NJT|1|U|A|1360
5NJT|1|U|A|1361
5NJT|1|U|G|1362
*
5NJT|1|U|C|1370
5NJT|1|U|G|1371
5NJT|1|U|C|1372

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L22