IL_5NJT_118

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCC*GA

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_118 not in the Motif Atlas

Geometric match to IL_7TZS_003

Geometric discrepancy: 0.251

The information below is about IL_7TZS_003

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

5NJT|1|U|U|1448
5NJT|1|U|C|1449
5NJT|1|U|C|1450
*
5NJT|1|U|G|1637
5NJT|1|U|A|1638

Current chains

Chain U

23S ribosomal RNA

Nearby chains