IL_5NJT_120

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAUG*CUAG

Length

9 nucleotides

Bulged bases

5NJT|1|U|U|1466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_120 not in the Motif Atlas

Homologous match to IL_4WF9_054

Geometric discrepancy: 0.4602

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5NJT|1|U|C|1463
5NJT|1|U|A|1464
5NJT|1|U|A|1465
5NJT|1|U|U|1466
5NJT|1|U|G|1467
*
5NJT|1|U|C|1625
5NJT|1|U|U|1626
5NJT|1|U|A|1627
5NJT|1|U|G|1628

Current chains

Chain U

23S ribosomal RNA

Nearby chains