IL_5NJT_122

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUAG*UGAUU

Length

9 nucleotides

Bulged bases

5NJT|1|U|U|1602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_122 not in the Motif Atlas

Homologous match to IL_7RQB_057

Geometric discrepancy: 0.2257

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5NJT|1|U|A|1483
5NJT|1|U|U|1484
5NJT|1|U|A|1485
5NJT|1|U|G|1486
*
5NJT|1|U|U|1599
5NJT|1|U|G|1600
5NJT|1|U|A|1601
5NJT|1|U|U|1602
5NJT|1|U|U|1603

Current chains

Chain U

23S ribosomal RNA

Nearby chains