IL_5NJT_130

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_130 not in the Motif Atlas

Homologous match to IL_7A0S_059

Geometric discrepancy: 0.1592

The information below is about IL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.5

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

5NJT|1|U|G|1696
5NJT|1|U|A|1697
5NJT|1|U|G|1698
5NJT|1|U|A|1699
5NJT|1|U|A|1700
5NJT|1|U|C|1701
*
5NJT|1|U|G|2033
5NJT|1|U|A|2034
5NJT|1|U|C|2035

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L3

Chain g

50S ribosomal protein L17