IL_5NJT_133

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACUCGG*CUGU

Length

10 nucleotides

Bulged bases

5NJT|1|U|G|2021

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_133 not in the Motif Atlas

Geometric match to IL_5TBW_077

Geometric discrepancy: 0.172

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

5NJT|1|U|A|1714
5NJT|1|U|C|1715
5NJT|1|U|U|1716
5NJT|1|U|C|1717
5NJT|1|U|G|1718
5NJT|1|U|G|1719
*
5NJT|1|U|C|2019
5NJT|1|U|U|2020
5NJT|1|U|G|2021
5NJT|1|U|U|2022

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L3

Chain d

50S ribosomal protein L14