IL_5NJT_147

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

5NJT|1|U|C|2084, 5NJT|1|U|U|2642

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_147 not in the Motif Atlas

Homologous match to IL_4WF9_079

Geometric discrepancy: 0.2013

The information below is about IL_4WF9_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

8

Unit IDs

5NJT|1|U|A|2083
5NJT|1|U|C|2084
5NJT|1|U|G|2085
*
5NJT|1|U|C|2641
5NJT|1|U|U|2642
5NJT|1|U|A|2643
5NJT|1|U|U|2644

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L3

Chain l

50S ribosomal protein L22

Chain p

50S ribosomal protein L32