IL_5NJT_169
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUGAG*CAAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 5NJT|1|U|G|2809
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NJT_169 not in the Motif Atlas
- Homologous match to IL_7RQB_102
- Geometric discrepancy: 0.1374
- The information below is about IL_7RQB_102
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.1
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
5NJT|1|U|U|2665
5NJT|1|U|U|2666
5NJT|1|U|G|2667
5NJT|1|U|A|2668
5NJT|1|U|G|2669
*
5NJT|1|U|C|2803
5NJT|1|U|A|2804
5NJT|1|U|A|2805
5NJT|1|U|G|2806
5NJT|1|U|A|2807
5NJT|1|U|U|2808
5NJT|1|U|G|2809
5NJT|1|U|A|2810
5NJT|1|U|G|2811
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain X
- 50S ribosomal protein L3
- Chain c
- 50S ribosomal protein L13
Coloring options: