IL_5NJT_170

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_170 not in the Motif Atlas

Homologous match to IL_7RQB_103

Geometric discrepancy: 0.1679

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5NJT|1|U|U|2681
5NJT|1|U|U|2682
5NJT|1|U|A|2683
5NJT|1|U|G|2684
5NJT|1|U|U|2685
5NJT|1|U|A|2686
5NJT|1|U|C|2687
*
5NJT|1|U|G|2692
5NJT|1|U|G|2693
5NJT|1|U|A|2694
5NJT|1|U|C|2695
5NJT|1|U|C|2696
5NJT|1|U|G|2697

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L6