IL_5NJT_172
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGUAC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- 5NJT|1|U|U|2718, 5NJT|1|U|A|2719
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NJT_172 not in the Motif Atlas
- Homologous match to IL_4WF9_102
- Geometric discrepancy: 0.1526
- The information below is about IL_4WF9_102
- Detailed Annotation
- UAA/GAN related, with intercalation
- Broad Annotation
- UAA/GAN related, with intercalation
- Motif group
- IL_82016.1
- Basepair signature
- cWW-L-tHS-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
5NJT|1|U|U|2716
5NJT|1|U|G|2717
5NJT|1|U|U|2718
5NJT|1|U|A|2719
5NJT|1|U|C|2720
*
5NJT|1|U|G|2747
5NJT|1|U|G|2748
5NJT|1|U|U|2749
5NJT|1|U|A|2750
5NJT|1|U|G|2751
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain X
- 50S ribosomal protein L3
- Chain g
- 50S ribosomal protein L17
- Chain i
- 50S ribosomal protein L19
Coloring options: