IL_5NJT_187

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAC*GUAC

Length

7 nucleotides

Bulged bases

5NJT|1|A|A|1403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_187 not in the Motif Atlas

Geometric match to IL_4P3U_007

Geometric discrepancy: 0.3056

The information below is about IL_4P3U_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

5NJT|1|A|G|932
5NJT|1|A|A|933
5NJT|1|A|C|934
*
5NJT|1|A|G|1401
5NJT|1|A|U|1402
5NJT|1|A|A|1403
5NJT|1|A|C|1404

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain E

30S ribosomal protein S5

Chain x

Ribosome hibernation promotion factor