IL_5NJT_189
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- ACGGGACGAACACCGAUAUGC*GAUUU
- Length
- 26 nucleotides
- Bulged bases
- 5NJT|1|U|U|72
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NJT_189 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.3671
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
5NJT|1|U|A|56
5NJT|1|U|C|57
5NJT|1|U|G|58
5NJT|1|U|G|59
5NJT|1|U|G|60
5NJT|1|U|A|61
5NJT|1|U|C|62
5NJT|1|U|G|63
5NJT|1|U|A|64
5NJT|1|U|A|65
5NJT|1|U|C|66
5NJT|1|U|A|67
5NJT|1|U|C|68
5NJT|1|U|C|69
5NJT|1|U|G|70
5NJT|1|U|A|71
5NJT|1|U|U|72
5NJT|1|U|A|73
5NJT|1|U|U|74
5NJT|1|U|G|75
5NJT|1|U|C|76
*
5NJT|1|U|G|109
5NJT|1|U|A|110
5NJT|1|U|U|111
5NJT|1|U|U|112
5NJT|1|U|U|113
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain m
- 50S ribosomal protein L23
- Chain r
- 50S ribosomal protein L34
- Chain v
- 50S ribosomal protein L29
Coloring options: