IL_5NJT_196

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUAAG*UGAAGC

Length

12 nucleotides

Bulged bases

5NJT|1|U|A|2794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_196 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.183

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5NJT|1|U|G|2766
5NJT|1|U|A|2767
5NJT|1|U|U|2768
5NJT|1|U|A|2769
5NJT|1|U|A|2770
5NJT|1|U|G|2771
*
5NJT|1|U|U|2791
5NJT|1|U|G|2792
5NJT|1|U|A|2793
5NJT|1|U|A|2794
5NJT|1|U|G|2795
5NJT|1|U|C|2796

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L6

Chain c

50S ribosomal protein L13

Chain t

50S ribosomal protein L36