IL_5NJT_198

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

5NJT|1|U|A|2571

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NJT_198 not in the Motif Atlas

Homologous match to IL_4WF9_097

Geometric discrepancy: 0.1933

The information below is about IL_4WF9_097

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_94991.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

15

Unit IDs

5NJT|1|U|U|2551
5NJT|1|U|G|2552
*
5NJT|1|U|C|2569
5NJT|1|U|A|2570
5NJT|1|U|A|2571
5NJT|1|U|G|2572

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L13

Chain t

50S ribosomal protein L36