IL_5NO3_008

3D structure

PDB id

5NO3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate without uS3)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

GGA*UUGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NO3_008 not in the Motif Atlas

Geometric match to IL_5J7L_008

Geometric discrepancy: 0.2011

The information below is about IL_5J7L_008

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

5NO3|1|A|G|75
5NO3|1|A|G|76
5NO3|1|A|A|77
*
5NO3|1|A|U|92
5NO3|1|A|U|93
5NO3|1|A|G|94
5NO3|1|A|C|95

Current chains

Chain A

16S ribosomal RNA

Nearby chains