IL_5NO3_038

3D structure

PDB id

5NO3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate without uS3)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NO3_038 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.1317

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

5NO3|1|A|G|887
5NO3|1|A|G|888
5NO3|1|A|A|889
5NO3|1|A|G|890
5NO3|1|A|U|891
5NO3|1|A|A|892
5NO3|1|A|C|893
5NO3|1|A|G|894
*
5NO3|1|A|U|905
5NO3|1|A|A|906
5NO3|1|A|A|907
5NO3|1|A|A|908
5NO3|1|A|A|909
5NO3|1|A|C|910

Current chains

Chain A

16S ribosomal RNA

Nearby chains