IL_5NO4_053
3D structure
- PDB id
- 5NO4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate with uS3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.16 Å
Loop
- Sequence
- UACAAAG*CAUAAAG
- Length
- 14 nucleotides
- Bulged bases (A, C, G, U)
- 1286U
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NO4_053 not in the Motif Atlas
- Homologous match to IL_5J7L_054
- Geometric discrepancy: 0.116
- The information below is about IL_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09129.1
- Basepair signature
- cWW-tWH-tWH-L-R-L-R-tWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
5NO4|1|A|U|1247
5NO4|1|A|A|1248
5NO4|1|A|C|1249
5NO4|1|A|A|1250
5NO4|1|A|A|1251
5NO4|1|A|A|1252
5NO4|1|A|G|1253
*
5NO4|1|A|C|1284
5NO4|1|A|A|1285
5NO4|1|A|U|1286
5NO4|1|A|A|1287
5NO4|1|A|A|1288
5NO4|1|A|A|1289
5NO4|1|A|G|1290
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain G
- 30S ribosomal protein S7
- Chain I
- 30S ribosomal protein S9
- Chain J
- 30S ribosomal protein S10
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