IL_5NP6_015

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

5NP6|1|D|U|244, 5NP6|1|D|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NP6_015 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.155

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

5NP6|1|D|G|242
5NP6|1|D|A|243
5NP6|1|D|U|244
5NP6|1|D|U|245
5NP6|1|D|A|246
5NP6|1|D|G|247
*
5NP6|1|D|C|277
5NP6|1|D|G|278
5NP6|1|D|A|279
5NP6|1|D|C|280
5NP6|1|D|G|281
5NP6|1|D|A|282
5NP6|1|D|U|283
5NP6|1|D|C|284

Current chains

Chain D

16S ribosomal RNA

Nearby chains

Chain O

30S ribosomal protein S12

Chain T

30S ribosomal protein S17