IL_5NP6_026

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

5NP6|1|D|A|532, 5NP6|1|D|U|534, 5NP6|1|D|A|535

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NP6_026 not in the Motif Atlas

Homologous match to IL_4LFB_021

Geometric discrepancy: 0.1693

The information below is about IL_4LFB_021

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_52042.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5NP6|1|D|G|515
5NP6|1|D|PSU|516
5NP6|1|D|G|517
5NP6|1|D|C|518
5NP6|1|D|C|519
5NP6|1|D|A|520
5NP6|1|D|G|521
*
5NP6|1|D|C|528
5NP6|1|D|G|529
5NP6|1|D|G|530
5NP6|1|D|U|531
5NP6|1|D|A|532
5NP6|1|D|A|533
5NP6|1|D|U|534
5NP6|1|D|A|535
5NP6|1|D|C|536

Current chains

Chain D

16S ribosomal RNA

Nearby chains

Chain A

mRNA

Chain F

30S ribosomal protein S3

Chain O

30S ribosomal protein S12