IL_5NP6_038

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NP6_038 not in the Motif Atlas

Homologous match to IL_6CZR_145

Geometric discrepancy: 0.1301

The information below is about IL_6CZR_145

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.6

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

5NP6|1|D|C|779
5NP6|1|D|A|780
5NP6|1|D|A|781
5NP6|1|D|A|782
5NP6|1|D|C|783
*
5NP6|1|D|G|799
5NP6|1|D|G|800
5NP6|1|D|U|801
5NP6|1|D|A|802
5NP6|1|D|G|803

Current chains

Chain D

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S11

Chain X

30S ribosomal protein S21

Chain Y

Large subunit ribosomal RNA; LSU rRNA