IL_5NP6_042

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

5NP6|1|D|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NP6_042 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.1563

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

5NP6|1|D|G|933
5NP6|1|D|C|934
5NP6|1|D|A|935
*
5NP6|1|D|U|1380
5NP6|1|D|U|1381
5NP6|1|D|C|1382
5NP6|1|D|C|1383
5NP6|1|D|C|1384

Current chains

Chain D

16S ribosomal RNA

Nearby chains

Chain B

Transfer RNA; tRNA

Chain J

30S ribosomal protein S7

Chain L

30S ribosomal protein S9