IL_5NP6_047

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCU*G(2MG)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NP6_047 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.1694

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

5NP6|1|D|G|1050
5NP6|1|D|C|1051
5NP6|1|D|U|1052
*
5NP6|1|D|G|1206
5NP6|1|D|2MG|1207
5NP6|1|D|C|1208

Current chains

Chain D

16S ribosomal RNA

Nearby chains

Chain F

30S ribosomal protein S3

Chain Q

30S ribosomal protein S14