IL_5NP6_060

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

G(4OC)CC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NP6_060 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.2167

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5NP6|1|D|G|1401
5NP6|1|D|4OC|1402
5NP6|1|D|C|1403
5NP6|1|D|C|1404
*
5NP6|1|D|G|1497
5NP6|1|D|UR3|1498
5NP6|1|D|A|1499
5NP6|1|D|A|1500
5NP6|1|D|C|1501

Current chains

Chain D

16S ribosomal RNA

Nearby chains

Chain A

mRNA

Chain B

Transfer RNA; tRNA

Chain Y

Large subunit ribosomal RNA; LSU rRNA