IL_5NP6_072

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NP6_072 not in the Motif Atlas

Geometric match to IL_7A0S_006

Geometric discrepancy: 0.1007

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

5NP6|1|Y|G|188
5NP6|1|Y|G|189
5NP6|1|Y|A|190
5NP6|1|Y|A|191
5NP6|1|Y|C|192
5NP6|1|Y|U|193
5NP6|1|Y|G|194
*
5NP6|1|Y|C|201
5NP6|1|Y|U|202
5NP6|1|Y|A|203
5NP6|1|Y|A|204
5NP6|1|Y|G|205
5NP6|1|Y|U|206
5NP6|1|Y|A|207
5NP6|1|Y|C|208

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L35

Chain j

50S ribosomal protein L15

Chain v

50S ribosomal protein L28