IL_5NP6_072
3D structure
- PDB id
- 5NP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S structure prior to bypassing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGAACUG*CUAAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5NP6_072 not in the Motif Atlas
- Geometric match to IL_7A0S_006
- Geometric discrepancy: 0.1007
- The information below is about IL_7A0S_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.2
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
5NP6|1|Y|G|188
5NP6|1|Y|G|189
5NP6|1|Y|A|190
5NP6|1|Y|A|191
5NP6|1|Y|C|192
5NP6|1|Y|U|193
5NP6|1|Y|G|194
*
5NP6|1|Y|C|201
5NP6|1|Y|U|202
5NP6|1|Y|A|203
5NP6|1|Y|A|204
5NP6|1|Y|G|205
5NP6|1|Y|U|206
5NP6|1|Y|A|207
5NP6|1|Y|C|208
Current chains
- Chain Y
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L35
- Chain j
- 50S ribosomal protein L15
- Chain v
- 50S ribosomal protein L28
Coloring options: