IL_5NP6_073

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NP6_073 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.1583

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

5NP6|1|Y|C|239
5NP6|1|Y|C|240
5NP6|1|Y|A|241
5NP6|1|Y|G|242
5NP6|1|Y|U|243
5NP6|1|Y|A|244
5NP6|1|Y|G|245
*
5NP6|1|Y|C|253
5NP6|1|Y|G|254
5NP6|1|Y|A|255
5NP6|1|Y|A|256
5NP6|1|Y|C|257
5NP6|1|Y|G|258

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L35

Chain j

50S ribosomal protein L15