IL_5NP6_085

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NP6_085 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.165

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

5NP6|1|Y|U|703
5NP6|1|Y|G|704
5NP6|1|Y|A|705
5NP6|1|Y|A|706
5NP6|1|Y|G|707
*
5NP6|1|Y|U|724
5NP6|1|Y|G|725
5NP6|1|Y|G|726
5NP6|1|Y|A|727
5NP6|1|Y|G|728

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2