IL_5NP6_100

3D structure

PDB id

5NP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S structure prior to bypassing

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5NP6_100 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1477

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

5NP6|1|Y|U|1004
5NP6|1|Y|C|1005
5NP6|1|Y|C|1006
5NP6|1|Y|C|1007
5NP6|1|Y|A|1008
5NP6|1|Y|A|1009
5NP6|1|Y|A|1010
5NP6|1|Y|G|1011
*
5NP6|1|Y|C|1150
5NP6|1|Y|A|1151

Current chains

Chain Y

23S ribosomal RNA

Nearby chains

Chain h

50S ribosomal protein L13

Chain o

50S ribosomal protein L20